> sessionInfo()
R version 4.4.2 (2024-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=English_United States.utf8  LC_CTYPE=English_United States.utf8    LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C                           LC_TIME=English_United States.utf8    

time zone: America/Los_Angeles
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] janitor_2.2.1     bnviewer_0.1.6    bnlearn_5.0.2     pROC_1.18.5       glmnet_4.1-8      Matrix_1.7-1      ggrepel_0.9.6    
 [8] microseq_2.1.6    rlang_1.1.4       data.table_1.16.4 here_1.0.1        pmartR_2.4.6      lubridate_1.9.4   forcats_1.0.0    
[15] stringr_1.5.1     dplyr_1.1.4       purrr_1.0.2       readr_2.1.5       tidyr_1.3.1       tibble_3.2.1      ggplot2_3.5.1    
[22] tidyverse_2.0.0   MSnID_1.25.2      Rcpp_1.0.13-1    

loaded via a namespace (and not attached):
  [1] shape_1.4.6.1               rstudioapi_0.17.1           jsonlite_1.8.9              MultiAssayExperiment_1.32.0
  [5] magrittr_2.0.3              MALDIquant_1.22.3           rmarkdown_2.29              zlibbioc_1.52.0            
  [9] vctrs_0.6.5                 memoise_2.0.1               htmltools_0.5.8.1           S4Arrays_1.6.0             
 [13] AnnotationHub_3.14.0        curl_6.0.1                  SparseArray_1.6.1           mzID_1.44.0                
 [17] plyr_1.8.9                  impute_1.80.0               cachem_1.1.0                igraph_2.1.4               
 [21] lifecycle_1.0.4             iterators_1.0.14            pkgconfig_2.0.3             R6_2.5.1                   
 [25] fastmap_1.2.0               snakecase_0.11.1            GenomeInfoDbData_1.2.13     MatrixGenerics_1.18.1      
 [29] clue_0.3-66                 digest_0.6.37               pcaMethods_1.98.0           colorspace_2.1-1           
 [33] AnnotationDbi_1.68.0        S4Vectors_0.44.0            rprojroot_2.0.4             GenomicRanges_1.58.0       
 [37] RSQLite_2.3.9               filelock_1.0.3              timechange_0.3.0            httr_1.4.7                 
 [41] abind_1.4-8                 compiler_4.4.2              bit64_4.6.0-1               withr_3.0.2                
 [45] doParallel_1.0.17           BiocParallel_1.40.0         DBI_1.2.3                   R.utils_2.13.0             
 [49] MASS_7.3-61                 rappdirs_0.3.3              DelayedArray_0.32.0         mzR_2.40.0                 
 [53] tools_4.4.2                 PSMatch_1.10.0              R.oo_1.27.0                 glue_1.8.0                 
 [57] QFeatures_1.16.0            R.cache_0.16.0              grid_4.4.2                  cluster_2.1.6              
 [61] reshape2_1.4.4              generics_0.1.3              gtable_0.3.6                tzdb_0.4.0                 
 [65] R.methodsS3_1.8.2           preprocessCore_1.68.0       hms_1.1.3                   XVector_0.46.0             
 [69] BiocGenerics_0.52.0         BiocVersion_3.20.0          foreach_1.5.2               pillar_1.10.1              
 [73] limma_3.62.2                splines_4.4.2               BiocFileCache_2.14.0        lattice_0.22-6             
 [77] survival_3.7-0              bit_4.5.0.1                 tidyselect_1.2.1            Biostrings_2.74.1          
 [81] knitr_1.50                  IRanges_2.40.1              ProtGenerics_1.38.0         SummarizedExperiment_1.36.0
 [85] stats4_4.4.2                xfun_0.51                   Biobase_2.66.0              statmod_1.5.0              
 [89] MSnbase_2.32.0              matrixStats_1.5.0           stringi_1.8.4               UCSC.utils_1.2.0           
 [93] lazyeval_0.2.2              yaml_2.3.10                 evaluate_1.0.3              codetools_0.2-20           
 [97] MsCoreUtils_1.18.0          BiocManager_1.30.25         cli_3.6.3                   affyio_1.76.0              
[101] munsell_0.5.1               GenomeInfoDb_1.42.1         dbplyr_2.5.0                png_0.1-8                  
[105] XML_3.99-0.18               parallel_4.4.2              blob_1.2.4                  AnnotationFilter_1.30.0    
[109] scales_1.3.0                affy_1.84.0                 ncdf4_1.23                  crayon_1.5.3  