'C:\Python39\Scripts\easypqp.exe' convert --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml 'D:\Public\Snigdha\Lung_macro\DIA\interact-1219435_PPI_Struc_Macrophages_A_T_DDA_1_19Jan24_Cicero_BEHCoA-24-01-13.pep.xml' --spectra 'D:\Public\Snigdha\Lung_macro\DIA\DDA_MZML\DDA_T_MZML\1219435_PPI_Struc_Macrophages_A_T_DDA_1_19Jan24_Cicero_BEHCoA-24-01-13.mzML' --exclude-range -1.5,3.5 --psms 1219435_PPI_Struc_Macrophages_A_T_DDA_1_19Jan24_Cicero_BEHCoA-24-01-13.psmpkl --peaks 1219435_PPI_Struc_Macrophages_A_T_DDA_1_19Jan24_Cicero_BEHCoA-24-01-13.peakpkl
'C:\Python39\Scripts\easypqp.exe' convert --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml 'D:\Public\Snigdha\Lung_macro\DIA\interact-1219512_PPI_Struc_Macrophages_B_T_DDA_2_19Jan24_Cicero_BEHCoA-24-01-13.pep.xml' --spectra 'D:\Public\Snigdha\Lung_macro\DIA\DDA_MZML\DDA_T_MZML\1219512_PPI_Struc_Macrophages_B_T_DDA_2_19Jan24_Cicero_BEHCoA-24-01-13.mzML' --exclude-range -1.5,3.5 --psms 1219512_PPI_Struc_Macrophages_B_T_DDA_2_19Jan24_Cicero_BEHCoA-24-01-13.psmpkl --peaks 1219512_PPI_Struc_Macrophages_B_T_DDA_2_19Jan24_Cicero_BEHCoA-24-01-13.peakpkl
'C:\Python39\Scripts\easypqp.exe' convert --max_delta_unimod 0.02 --max_delta_ppm 15.0 --fragment_types '['"'"'b'"'"','"'"'y'"'"',]' --enable_unannotated --pepxml 'D:\Public\Snigdha\Lung_macro\DIA\interact-1219551_PPI_Struc_Macrophages_C_T_DDA_3_19Jan24_Cicero_BEHCoA-24-01-13.pep.xml' --spectra 'D:\Public\Snigdha\Lung_macro\DIA\DDA_MZML\DDA_T_MZML\1219551_PPI_Struc_Macrophages_C_T_DDA_3_19Jan24_Cicero_BEHCoA-24-01-13.mzML' --exclude-range -1.5,3.5 --psms 1219551_PPI_Struc_Macrophages_C_T_DDA_3_19Jan24_Cicero_BEHCoA-24-01-13.psmpkl --peaks 1219551_PPI_Struc_Macrophages_C_T_DDA_3_19Jan24_Cicero_BEHCoA-24-01-13.peakpkl
'C:\Python39\Scripts\easypqp.exe' library --psmtsv 'D:\Public\Snigdha\Lung_macro\DIA\psm.tsv' --peptidetsv 'D:\Public\Snigdha\Lung_macro\DIA\peptide.tsv' --out easypqp_lib_openswath.tsv --rt_lowess_fraction 0.0 'D:\Public\Snigdha\Lung_macro\DIA\filelist_easypqp_library.txt'