Raw file	Experiment	Enzyme	Enzyme mode	Enzyme first search	Enzyme mode first search	Use enzyme first search	Variable modifications	Fixed modifications	Multi modifications	Variable modifications first search	Use variable modifications first search	Requantify	Multiplicity	Max. missed cleavages	Labels0	LC-MS run type	Time-dependent recalibration	MS	MS/MS	MS3	MS/MS Submitted	MS/MS Submitted (SIL)	MS/MS Submitted (ISO)	MS/MS Submitted (PEAK)	MS/MS Identified	MS/MS Identified (SIL)	MS/MS Identified (ISO)	MS/MS Identified (PEAK)	MS/MS Identified [%]	MS/MS Identified (SIL) [%]	MS/MS Identified (ISO) [%]	MS/MS Identified (PEAK) [%]	Peptide Sequences Identified	Peaks	Peaks Sequenced	Peaks Sequenced [%]	Peaks Repeatedly Sequenced	Peaks Repeatedly Sequenced [%]	Isotope Patterns	Isotope Patterns Sequenced	Isotope Patterns Sequenced (z>1)	Isotope Patterns Sequenced [%]	Isotope Patterns Sequenced (z>1) [%]	Isotope Patterns Repeatedly Sequenced	Isotope Patterns Repeatedly Sequenced [%]	Recalibrated	Av. Absolute Mass Deviation [ppm]	Mass Standard Deviation [ppm]	Av. Absolute Mass Deviation [mDa]	Mass Standard Deviation [mDa]	Label free norm param
1219435_PPI_Struc_Macrophages_A_T_DDA_1_19Jan24_Cicero_BEHCoA-24-01-13	Mock_T_DDA	Trypsin/P	Semispecific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	0		Standard		6702	51901	0	56323	47479	0	8844	15805	15420	0	385	28	32	0	4.4	15645	1026690	51115	5	540	1.1	166735	46098	45620	28	30	1212	2.6	+	0.6015	0.8636	0.37547	0.56451	
1219512_PPI_Struc_Macrophages_B_T_DDA_2_19Jan24_Cicero_BEHCoA-24-01-13	Mock_Macro_T_DDA	Trypsin/P	Semispecific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	0		Standard		6733	52197	0	56538	47856	0	8682	17435	17008	0	427	31	36	0	4.9	17293	1038687	51414	4.9	539	1	171300	46492	46028	27	30	1199	2.6	+	0.6025	0.86539	0.37801	0.569	
1219551_PPI_Struc_Macrophages_C_T_DDA_3_19Jan24_Cicero_BEHCoA-24-01-13	Macro_T_DDA	Trypsin/P	Semispecific			False	Oxidation (M);Acetyl (Protein N-term)	Carbamidomethyl (C)			False	True	1	0		Standard		6756	51928	0	56687	47169	0	9518	16003	15614	0	389	28	33	0	4.1	15759	949604	51051	5.4	612	1.2	155037	45730	45297	29	33	1287	2.8	+	0.59957	0.86695	0.37763	0.57313	
Total																		20191	156026	0	169548	142504	0	27044	49243	48042	0	1201	29	34	0	4.4	27708	3014981					493072	138320	136945	28	31	3698	2.7		0.60123	0.86532	0.37707	0.56891	
